Main contributions
Xi Peng, Shang Wang, Miaoxiao Wang, Kai Feng, Qing He, Xingsheng Yang, Weiguo Hou, Fangru Li, Yuxiang Zhao, Baolan Hu, Xiao Zou, Ye Deng*. (2024) Metabolic interdependencies in thermophilic communities are revealed using co-occurrence and complementarity networks. Nature Communications. Link
Chinese repo: Nature Communications | 利用共现与代谢互补网络揭示嗜热菌群的代谢依赖
Xi Peng, Kai Feng*, Xingsheng Yang, Qing He, Bo Zhao, Tong Li, Shang Wang, Ye Deng*. (2024) iNAP 2.0: Harnessing metabolic complementarity in microbial network analysis. iMeta. Link
Xi Peng, Kai Feng, Shuzhen Li, Ye Deng*. (2022) Analytical methods for metagenomic technology and microbial community diversity (in Chinese). Science & Technology Review. Link
Kai Feng, Xi Peng, Zheng Zhang, Songsong Gu, Qing He, Wenli Shen, Zhujun Wang, Danrui Wang, Qiulong Hu, Yan Li, Shang Wang, Ye Deng*. (2022) iNAP: An integrated network analysis pipeline for microbiome studies. iMeta. Link
Other contributions
Xingsheng Yang, Xi Peng, Kai Feng, Shang Wang, Xiao Zou, Ye Deng*. (2025) Organic molecular network analysis reveals transformation signatures of dissolved organic matter during anaerobic digestion process. Water Research. Link
Kai Feng, Qing He, Xi Peng, Xingsheng Yang, Xiongfeng Du, Ziyan Wei, Shang Wang, Xiao Zou, Yuguang Zhang, Ye Deng*. (2025) Temperature and biodiversity regulate the robustness of plant–microbe networks in natural forests at large scale. Global Change Biology. Link
Kai Feng, Shang Wang, Qing He, Michael Bonkowski, Mohammad Bahram, Etienne Yergeau, Zhujun Wang, Xi Peng, Danrui Wang, Shuzhen Li, Yingcheng Wang, Zhicheng Ju, Xiongfeng Du, Chengliang Yan, Songsong Gu, Tong Li, Xingsheng Yang, Wenli Shen, Ziyan Wei, Qiulong Hu, Pengfei Li, Yanmei Zhu, Guangxin Lu, Clara Qin, Gengxin Zhang, Chunwang Xiao, Yunfeng Yang, Jizhong Zhou, Ye Deng*. (2024) CoBacFM: Core Bacteria Forecast Model for global grassland pH dynamics under future climate warming scenarios. One Earth. Link
Xingsheng Yang, Kai Feng, Shang Wang, Mengting Maggie Yuan, Xi Peng, Qing He, Danrui Wang, Wenli Shen, Bo Zhao, Xiongfeng Du, Yingcheng Wang, Linlin Wang, Dong Cao, Wenzong Liu, Jianjun Wang, Ye Deng*. (2024) Unveiling the deterministic dynamics of microbial meta-metabolism: a multi-omics investigation of anaerobic biodegradation. Microbiome. Link
Danrui Wang, Jiangtao Li, Lei Su, Wenli Shen, Kai Feng, Xi Peng, Zhujun Wang, Bo Zhao, Weiwei Cai, Wenzong Liu, Aijie Wang, Ye Deng*. (2023) Phylogenetic diversity of functional genes in deep-sea cold seeps: a novel perspective on metagenomics. Microbiome. Link
Bo Zhao, Zhaojing Zhang, Kai Feng, Xi Peng, Danrui Wang, Weiwei Cai, Wenzong Liu, Aijie Wang, Ye Deng*. (2024) Inoculum source determines the stress resistance of electroactive functional taxa in biofilms: A metagenomic perspective. Science of the Total Environment. Link
Qing He, Shang Wang*, Kai Feng, Sean T. Michaletz, Weiguo Hou, Fangru Li, Yidi Zhang, Danrui Wang, Xi Peng, Xingsheng Yang, Ye Deng*. (2023) High speciation rate of niche specialists in hot springs. The ISME Journal. Link
Zheng Zhang, Hongjun Li, Wenli Shen, Kai Feng, Shuzhen Li, Songsong Gu, Yuqi Zhou, Xi Peng, Xiongfeng Du, Qing He, Linlin Wang, Zhaojing Zhang, Danrui Wang, Zhujun Wang, Ye Deng*. (2022) The stability of phyto-zooplanktonic networks varied with zooplanktonic sizes in Chinese coastal ecosystem. mSystems. Link
Tong Li, Kai Feng, Shang Wang, Xingsheng Yang, Xi Peng, Qichao Tu, Ye Deng*. (2024) Beyond water and soil: Air emerges as a major reservoir of human pathogens. Environment International. Link
Zhujun Wang, Kai Feng, Ziyan Wei, Yueni Wu, Kazuo Isobe, Keishi Senoo, Xi Peng, Danrui Wang, Qing He, Xiongfeng Du, Shuzhen Li, Yan Li, Ye Deng*. (2022) Evaluation and redesign of the primers for detecting nitrogen cycling genes in environments. Methods in Ecology and Evolution. Link
Xingsheng Yang, Zhaojing Zhang, Shuzhen Li, Qing He, Xi Peng, Xiongfeng Du, Kai Feng, Shang Wang*, Ye Deng*. (2022) Fungal dynamics and potential functions during anaerobic digestion of food waste. Environmental Research. Link
Shuzhen Li, Xiongfeng Du, Kai Feng, Yueni Wu, Qing He, Zhujun Wang, Yangying Liu, Danrui Wang, Xi Peng, Zhaojing Zhang, Arthur Escalas, Yuanyuan Qu, Ye Deng*. (2021) Assessment of microbial α-diversity in one meter squared topsoil. Soil Ecology Letters. Link
Shuzhen Li, Ye Deng*, Xiongfeng Du, Kai Feng, Yueni Wu, Qing He, Zhujun Wang, Yangying Liu, Danrui Wang, Xi Peng, Zhaojing Zhang, Arthur Escalas, Yuanyuan Qu. (2021) Sampling cores and sequencing depths affected the measurement of microbial diversity in soil quadrats. Science of the Total Environment. Link
Xiongfeng Du, Songsong Gu, Zheng Zhang, Shuzhen Li, Yuqi Zhou, Zhaojing Zhang, Qi Zhang, Linlin Wang, Zhicheng Ju, Chengliang Yan, Tong Li, Danrui Wang, Xingsheng Yang, Xi Peng, Ye Deng*. (2023) Spatial distribution patterns across multiple microbial taxonomic groups. Environmental Research. Link
Xiongfeng Du, Ye Deng*, Shuzhen Li, Arthur Escalas, Kai Feng, Qing He, Zhujun Wang, Yueni Wu, Danrui Wang, Xi Peng, Shang Wang. (2021) Steeper spatial scaling patterns of subsoil microbiota are shaped by deterministic assembly process. Molecular Ecology. Link